Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs3746259 | chr19:19245771 | C/T | 0.000796 | 65 | 64.83 | 76.8 | 28.5 | KM Plot |
| KICH | rs3888912 | chr9:106705225 | A/G | 5.42E-7 | 65 | 64.83 | 75.97 | 16.9 | KM Plot |
| KICH | rs4239136 | chr17:16801493 | A/T | 4.68E-7 | 65 | 66.78 | 59.23 | 16.9 | KM Plot |
| KICH | rs435945 | chr6:33496632 | C/T | 4.78E-7 | 65 | 66.1 | 53 | 16.9 | KM Plot |
| KICH | rs453295 | chr6:33501330 | T/C | 4.78E-7 | 65 | 66.1 | 53 | 16.9 | KM Plot |
| KICH | rs45477602 | chr20:44337422 | T/C | 9.8E-5 | 63 | 66.1 | 17.22 | 77.8 | KM Plot |
| KICH | rs4552310 | chr3:59415244 | A/G | 5.58E-6 | 65 | 68.13 | 26.82 | 87.77 | KM Plot |
| KICH | rs4786331 | chr16:2883234 | C/T | 6.11E-7 | 65 | 27.2 | 66.1 | 68.13 | KM Plot |
| KICH | rs4907176 | chr1:84166433 | C/A | 1.34E-6 | 62 | 64.83 | 99.7 | 20.75 | KM Plot |
| KICH | rs4915934 | chr1:64360042 | T/C | 1.33E-6 | 63 | 20.75 | 23.8 | 71.25 | KM Plot |
| KICH | rs558553 | chr2:239346196 | C/T | 0.000714 | 65 | 25.13 | 74.32 | 63.63 | KM Plot |
| KICH | rs57295274 | chr14:91788972 | T/G | 5.97E-6 | 63 | 66.78 | 73.7 | 26.33 | KM Plot |
| KICH | rs58173242 | chr10:86637406 | C/T | 0.00011 | 64 | 63.23 | 99 | 24.17 | KM Plot |
| KICH | rs58234956 | chr14:91789674 | G/C | 5.97E-6 | 63 | 66.78 | 73.7 | 26.33 | KM Plot |
| KICH | rs58339084 | chr11:105636759 | C/T | 0.00013 | 65 | 68.8 | 63.23 | 25.13 | KM Plot |